GENIOSave Benchmark

 

Dataset n.1:

Dataset name: ERR3863175-ERR3863206
Dataset source: https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=776582
Dataset type: Paired
FASTQ.GZIP size [GB]: 77,67
GENIOSave size [GB]: 51,97
GENIOSave vs GZIP gain [%]: 33%
BAM size [GB]: 67,64
GENIOSave size [GB]: 31,67
GENIOSave vs BAM gain[%]: 53%
Details: Benchmark – detail dataset1.xlsx

 

Dataset n.2:

Dataset name: SRR17175795-SRR17175812
Dataset source: https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=787399
Dataset type: Paired
FASTQ.GZIP size [GB]: 9,40
GENIOSave size [GB]: 6,68
GENIOSave vs GZIP gain [%]: 29%
Details: Benchmark – detail dataset2.xlsx

 

Dataset n.3:

Dataset name: SRR17399856-SRR17399867
Dataset source: https://www.ncbi.nlm.nih.gov/sra?term=SRP353094
Dataset type: Paired
FASTQ.GZIP size [GB]: 59,51
GENIOSave size [GB]: 40,39
GENIOSave vs GZIP gain [%]: 32%
BAM size [GB]: 50,36
GENIOSave size [GB]: 29,30
GENIOSave vs BAM gain[%]: 42%
Details: Benchmark – detail dataset3.xlsx

 

Dataset n.4:

Dataset name: ERR358485-ERR358488
Dataset source: https://www.ncbi.nlm.nih.gov/bioproject/PRJEB4829
Dataset type: Paired
FASTQ.GZIP size [GB]: 52,37
GENIOSave size [GB]: 34,73
GENIOSave vs GZIP gain [%]: 34%
BAM size [GB]: 41,22
GENIOSave size [GB]: 22,26
GENIOSave vs BAM gain[%]: 46%
Details: Benchmark – detail dataset4.xlsx

 

Dataset n.5:

Dataset name: SRR12682873-SRR12682875
Dataset source: https://www.ncbi.nlm.nih.gov/bioproject/664764
Dataset type: Paired
FASTQ.GZIP size [GB]: 11,46
GENIOSave size [GB]: 7,15
GENIOSave vs GZIP gain [%]: 37%
BAM size [GB]: 9,15
GENIOSave size [GB]: 3,53
GENIOSave vs BAM gain[%]: 61%
Details: Benchmark – detail dataset5.xlsx

 

Dataset n.6:

Dataset name: ERR7196779-ERR7196787
Dataset source: https://www.ncbi.nlm.nih.gov/bioproject/PRJEB48457
Dataset type: Single
FASTQ.GZIP size [GB]: 1,65
GENIOSave size [GB]: 1,07
GENIOSave vs GZIP gain [%]: 39%
BAM size [GB]: 1,50
GENIOSave size [GB]: 0,54
GENIOSave vs BAM gain[%]: 64%
Details: Benchmark – detail dataset6.xlsx